Taxon	KO.D0.ORAL.A	KO.D0.ORAL.B	KO.D0.ORAL.C	KO.D0.ORAL.D	KO.D0.ORAL.E	WT.D0.ORAL.A	WT.D0.ORAL.B	WT.D0.ORAL.C	WT.D0.ORAL.D	WT.D0.ORAL.E
Bacteroides acidifaciens (SP1) 	0	0	0	0	22	0	0	0	0	8
Faecalibaculum rodentium (SP10) 	0	0	35	0	17	0	0	0	0	23
Eubacteriales_[G-2] bacterium_MOT-162 (SP11) 	0	0	4	0	29	7	0	0	0	8
Oscillospiraceae_[G-4] bacterium_MOT-151 (SP12) 	0	0	0	0	0	0	0	0	0	6
Duncaniella freteri (SP13) 	0	0	0	0	12	0	0	0	0	7
Ligilactobacillus murinus (SP14) 	1134	4654	562	144	425	74	1587	337	28	283
Limosilactobacillus reuteri (SP16) 	0	12	138	0	317	46	0	0	0	144
Helicobacter ganmani (SP17) 	5	4	17	0	23	18	0	0	0	14
Ileibacterium valens (SP20) 	0	0	0	0	0	0	0	0	0	4
Rodentibacter pneumotropicus (SP21) 	228	2204	445	545	316	375	225	749	501	75
Acutalibacter muris (SP23) 	0	0	0	0	6	9	0	0	0	11
Muribaculum intestinale (SP24) 	0	0	0	0	16	0	0	0	0	16
Peptococcaceae_[G-1] bacterium_MOT-146 (SP25) 	0	0	0	0	20	0	0	0	0	7
Porphyromonas sp._MOT-131 (SP28) 	0	0	0	20	0	0	0	0	0	0
Muribacter muris (SP29) 	0	0	0	316	0	222	418	511	239	158
Romboutsia ilealis (SP3) 	0	0	0	0	5	0	0	0	0	7
Parabacteroides goldsteinii (SP31) 	0	0	0	0	3	0	0	0	0	0
Lactobacillus intestinalis (SP32) 	13	23	31	9	59	12	4	0	8	56
Adlercreutzia caecimuris (SP36) 	0	0	0	0	6	4	0	0	0	3
Prevotella sp._MOT-128 (SP37) 	0	0	13	0	41	0	0	0	0	18
Rodentibacter heylii (SP38) 	0	0	73	5	2013	0	18	99	11	62
Mollicutes_[G-1] bacterium_MOT-186 (SP39) 	0	0	0	0	6	0	0	0	0	0
Carnobacteriaceae_[G-1] bacterium_MOT-198 (SP4) 	22	26	265	18	145	557	157	513	21	21
Parvibacter caecicola (SP40) 	0	0	5	0	0	0	0	0	0	0
Phocaeicola sartorii (SP42) 	0	0	8	0	21	0	0	0	0	16
Corynebacterium mastitidis (SP43) 	91	76	12	36	20	20	31	12	0	19
Muribacter sp._MOT-142 (SP45) 	0	0	0	262	0	0	0	7	5	0
Erysipelotrichaceae_[G-1] bacterium_MOT-189 (SP5) 	9	0	104	0	75	21	13	0	53	123
Lactobacillus johnsonii (SP54) 	10	0	409	18	912	147	7	0	2	615
Muribaculaceae_[G-1] bacterium_MOT-129 (SP55) 	19	0	34	0	43	0	0	0	4	27
Oscillospiraceae_[G-3] bacterium_MOT-150 (SP56) 	4	0	26	0	11	0	0	0	0	0
Streptococcus acidominimus (SP58) 	0	0	0	360	0	0	0	10	8	0
Lachnospiraceae_[G-11] bacterium_MOT-178 (SP6) 	0	0	0	0	3	0	0	0	13	0
Streptococcus sp._MOT-012 (SP7) 	98	577	337	30	392	133	182	1900	195	120
Akkermansia muciniphila (SP75) 	0	0	25	0	8	0	0	0	0	0
Lachnospiraceae_[G-14] bacterium_MOT-185 (SP8) 	0	0	0	0	33	0	0	0	30	0
Lachnospiraceae_[G-2] bacterium_MOT-167 (SP85) 	0	0	2	0	0	0	0	0	0	0
Streptococcus danieliae (SP9) 	5612	15103	5451	9567	4888	1970	15295	20116	5740	8100
Weeksellaceae_[G_1] bacterium_MOT-126 (SP92) 	0	0	0	5	0	0	0	0	0	0
Helicobacter typhlonius (SP93) 	12	0	123	0	132	54	0	0	0	27
Muribacter sp._MOT-143 (SP94) 	0	0	0	842	0	511	1161	1208	501	234
Lachnospiraceae_[G-11] bacterium_MOT-177_nov_95.287% (SPN108) 	0	0	0	0	29	11	0	0	0	10
Muribaculaceae_[G-1] bacterium_MOT-129_nov_93.228% (SPN109) 	5	4	51	0	36	9	0	0	0	50
Enterocloster clostridioformis_nov_92.769% (SPN111) 	0	0	13	0	28	19	0	0	0	44
Lachnospiraceae_[G-11] bacterium_MOT-176_nov_95.797% (SPN123) 	5	0	8	0	28	9	0	0	0	11
Oscillospiraceae_[G-3] bacterium_MOT-150_nov_94.639% (SPN131) 	0	0	4	0	17	8	0	0	4	11
Prevotellamassilia timonensis_nov_89.413% (SPN135) 	0	0	8	0	35	0	0	0	0	15
Mailhella massiliensis_nov_91.242% (SPN136) 	0	0	6	0	9	5	0	0	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.993% (SPN14) 	0	0	91	0	49	0	0	0	0	11
Muribaculaceae_[G-1] bacterium_MOT-129_nov_91.132% (SPN15) 	8	0	8	0	19	0	0	0	0	7
Lachnospiraceae_[G-13] bacterium_MOT-181_nov_89.824% (SPN153) 	0	0	15	0	30	22	0	0	0	20
Parasutterella excrementihominis_nov_96.122% (SPN159) 	0	0	0	0	8	0	0	0	0	7
Prevotella shahii_nov_91.084% (SPN163) 	0	0	6	0	47	0	0	0	0	17
Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.552% (SPN170) 	0	0	7	0	0	0	0	0	0	0
Bacteroidetes_[G-3] bacterium_HMT_365_nov_87.206% (SPN182) 	0	0	6	0	5	0	0	0	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.810% (SPN185) 	0	0	0	0	0	0	0	0	0	4
Tidjanibacter massiliensis_nov_90.391% (SPN194) 	0	0	8	0	16	0	0	0	0	5
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.701% (SPN2) 	0	0	12	0	0	2	0	0	0	0
Bacteroidetes_[G-3] bacterium_HMT_365_nov_87.666% (SPN218) 	0	0	0	0	24	6	0	0	0	11
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.463% (SPN219) 	0	0	0	0	5	0	0	0	0	0
Oscillospiraceae_[G-3] bacterium_MOT-150_nov_95.045% (SPN228) 	0	0	11	0	37	4	0	0	0	19
Muribaculaceae_[G-1] bacterium_MOT-129_nov_91.593% (SPN230) 	0	4	10	0	11	0	0	0	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.542% (SPN242) 	0	0	8	0	15	0	0	0	0	0
Lacrimispora saccharolytica_nov_91.495% (SPN250) 	0	0	14	0	13	9	0	0	0	10
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.231% (SPN254) 	4	0	3	0	22	4	0	0	0	10
Ihubacter massiliensis_nov_96.039% (SPN255) 	0	0	8	0	0	0	0	0	0	0
Lachnospiraceae_[G-14] bacterium_MOT-182_nov_90.752% (SPN261) 	0	7	10	0	54	4	0	0	0	19
Duncaniella freteri_nov_92.271% (SPN27) 	0	0	0	0	10	0	0	0	0	4
Lachnospiraceae_[G-4] bacterium_MOT-169_nov_94.441% (SPN278) 	0	0	6	0	20	4	0	0	0	15
Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351_nov_96.439% (SPN280) 	0	0	0	0	6	0	0	0	0	4
Bacteroides uniformis_nov_96.825% (SPN281) 	0	0	0	0	0	0	0	0	0	2
Duncaniella freteri_nov_91.090% (SPN282) 	0	0	20	0	15	16	0	0	0	19
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.136% (SPN284) 	0	0	21	0	65	16	0	0	0	37
Oscillospiraceae_[G-6] bacterium_MOT-153_nov_92.971% (SPN286) 	0	0	0	0	32	0	0	0	5	17
Lachnospiraceae_[G-14] bacterium_MOT-185_nov_96.335% (SPN287) 	0	5	112	0	440	109	0	0	0	95
Duncaniella freteri_nov_91.008% (SPN288) 	6	2	0	0	0	6	0	0	6	0
Eubacterium xylanophilum_nov_92.240% (SPN289) 	0	0	0	0	42	0	0	0	0	2
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.027% (SPN292) 	0	0	0	0	10	0	0	0	0	0
Lachnospiraceae_[G-4] bacterium_MOT-169_nov_95.127% (SPN295) 	6	0	0	0	0	0	0	0	0	0
Lachnospiraceae_[G-10] bacterium_MOT-175_nov_91.446% (SPN296) 	0	0	22	0	92	12	0	0	0	23
Muribaculaceae_[G-1] bacterium_MOT-129_nov_93.694% (SPN300) 	0	0	38	0	43	0	0	0	0	0
Lachnospiraceae_[G-12] bacterium_MOT-180_nov_95.782% (SPN302) 	0	0	14	0	66	31	0	0	0	22
Mediterraneibacter [Ruminococcus] gnavus_nov_94.433% (SPN306) 	0	0	23	0	45	21	0	0	0	41
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.126% (SPN307) 	0	0	11	0	44	13	0	0	0	22
Oscillibacter valericigenes_nov_95.386% (SPN308) 	0	0	5	0	22	0	0	0	0	10
Eubacteriales_[G-2] bacterium_MOT-162_nov_94.260% (SPN309) 	0	2	5	0	11	0	0	0	0	0
Oscillibacter valericigenes_nov_94.219% (SPN310) 	0	0	5	0	8	6	0	0	0	2
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.082% (SPN312) 	0	4	19	0	48	10	0	0	0	31
Lachnospiraceae_[G-8] bacterium_MOT-173_nov_88.988% (SPN314) 	0	0	17	0	80	46	0	0	0	19
Duncaniella freteri_nov_90.761% (SPN316) 	0	0	0	0	5	0	0	0	0	0
Lachnospiraceae_[G-6] bacterium_MOT-171_nov_93.621% (SPN318) 	0	0	9	0	3	5	0	0	0	10
Lachnospiraceae_[G-3] bacterium_MOT-168_nov_96.845% (SPN319) 	0	0	9	0	10	4	0	0	3	0
Eubacterium coprostanoligenes_nov_94.861% (SPN320) 	0	0	0	0	3	0	0	0	0	0
Alistipes senegalensis_nov_95.604% (SPN322) 	0	0	2	0	0	0	0	0	0	0
Enterocloster bolteae_nov_93.210% (SPN323) 	0	0	5	0	6	0	0	0	0	0
Mucispirillum schaedleri_nov_96.136% (SPN324) 	0	0	84	0	30	0	3	0	4	20
Lachnospiraceae_[G-12] bacterium_MOT-180_nov_96.794% (SPN325) 	0	0	14	0	66	13	0	0	0	30
Faecalimonas umbilicata_nov_92.686% (SPN326) 	0	0	0	0	0	7	0	0	0	4
Roseburia intestinalis_nov_88.569% (SPN328) 	0	0	11	0	15	15	0	0	0	25
Faecalicatena contorta_nov_92.181% (SPN329) 	0	0	0	0	29	5	0	0	2	8
Turicibacter sanguinis_nov_97.503% (SPN334) 	0	0	8	0	0	2	0	0	0	29
Eubacteriales_[G-3] bacterium_MOT-163_nov_85.157% (SPN336) 	0	0	10	0	0	0	0	0	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.048% (SPN337) 	0	0	20	0	14	0	0	0	0	8
Beduini massiliensis_nov_89.413% (SPN341) 	0	0	3	0	0	0	0	0	0	0
Lachnospiraceae_[G-7] bacterium_MOT-172_nov_91.176% (SPN345) 	0	0	0	0	0	0	0	0	0	3
Muribaculaceae_[G-1] bacterium_MOT-129_nov_89.775% (SPN347) 	0	0	0	0	12	0	0	0	0	0
Adlercreutzia equolifaciens_nov_92.350% (SPN348) 	0	0	0	0	8	0	0	0	0	6
Lacrimispora saccharolytica_nov_93.333% (SPN349) 	0	0	0	0	0	5	0	0	0	0
Paraeggerthella hongkongensis_nov_90.300% (SPN351) 	0	0	4	0	0	0	0	0	0	0
Adlercreutzia equolifaciens_nov_91.562% (SPN353) 	0	0	0	0	0	0	0	0	0	2
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.565% (SPN354) 	0	5	0	0	0	0	0	0	0	0
Eubacterium oxidoreducens_nov_92.539% (SPN355) 	0	0	0	0	0	5	0	0	0	12
Hungatella xylanolytica_nov_94.045% (SPN356) 	0	0	7	0	16	13	0	0	0	12
Eubacterium xylanophilum_nov_92.177% (SPN358) 	0	0	0	0	0	0	0	0	2	0
Lachnospiraceae_[G-10] bacterium_MOT-175_nov_89.145% (SPN360) 	0	0	3	0	24	0	0	0	0	0
Oscillospiraceae_[G-3] bacterium_MOT-150_nov_90.391% (SPN361) 	0	0	0	0	12	0	0	0	0	14
Anaerotignum lactatifermentans_nov_96.362% (SPN362) 	0	0	0	0	7	0	0	0	0	7
Lachnospiraceae_[G-10] bacterium_MOT-175_nov_89.933% (SPN363) 	0	0	5	0	54	8	0	0	0	6
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_93.132% (SPN365) 	0	0	0	0	17	4	0	0	0	3
Mordavella massiliensis_nov_92.730% (SPN366) 	0	0	29	0	38	19	0	0	0	16
Eubacteriales_[G-4] bacterium_MOT-164_nov_97.785% (SPN367) 	0	0	3	0	0	0	0	0	0	0
Caproiciproducens galactitolivorans_nov_91.253% (SPN368) 	0	0	0	0	11	0	0	0	0	6
Eubacterium xylanophilum_nov_91.287% (SPN369) 	0	0	0	0	24	5	0	0	0	3
Eisenbergiella massiliensis_nov_90.373% (SPN371) 	0	0	0	0	15	0	0	0	0	0
Lawsonibacter asaccharolyticus_nov_94.722% (SPN372) 	0	0	0	0	5	0	0	0	0	3
Lacrimispora amygdalina_nov_91.078% (SPN374) 	0	0	3	0	0	0	0	0	0	4
Alistipes senegalensis_nov_95.658% (SPN377) 	0	0	21	0	4	0	0	0	0	7
Acutalibacter muris_nov_97.598% (SPN378) 	0	2	9	0	17	12	0	0	0	11
Duncaniella freteri_nov_93.493% (SPN38) 	0	0	0	0	11	0	0	0	0	0
Lachnospiraceae_[G-11] bacterium_MOT-178_nov_93.568% (SPN382) 	0	0	8	0	55	12	0	0	0	8
Lachnospiraceae_[G-11] bacterium_MOT-177_nov_94.726% (SPN383) 	0	0	0	0	14	0	0	0	0	9
Lachnospiraceae_[G-10] bacterium_MOT-175_nov_93.805% (SPN384) 	0	0	0	0	12	0	0	0	0	0
Flavonifractor plautii_nov_93.823% (SPN385) 	0	0	0	0	0	0	0	0	0	7
Lachnospiraceae_[G-11] bacterium_MOT-177_nov_96.783% (SPN387) 	0	0	17	0	33	11	0	0	0	18
Lacrimispora celerecrescens_nov_93.664% (SPN388) 	0	0	8	0	0	0	0	0	2	8
Lachnospiraceae_[G-10] bacterium_MOT-175_nov_89.153% (SPN390) 	0	0	17	0	42	15	0	0	0	19
Oscillospiraceae_[G-2] bacterium_MOT-149_nov_94.574% (SPN391) 	0	0	0	0	0	0	0	0	0	9
Anaerotaenia torta_nov_88.866% (SPN392) 	0	0	4	0	37	12	0	0	0	38
Lachnospiraceae_[G-2] bacterium_MOT-167_nov_93.033% (SPN394) 	0	0	0	0	7	0	0	0	0	0
Mollicutes_[G-2] bacterium_MOT-188_nov_87.231% (SPN397) 	0	0	0	0	0	0	0	0	0	3
Eubacterium xylanophilum_nov_92.376% (SPN398) 	0	0	0	0	12	0	0	0	0	3
Mollicutes_[G-2] bacterium_MOT-187_nov_97.281% (SPN399) 	0	0	0	0	3	0	0	0	0	6
Desulfovibrio desulfuricans_nov_92.438% (SPN43) 	0	0	34	0	10	3	0	0	0	9
Defluviitalea saccharophila_nov_82.903% (SPN50) 	13	11	166	0	192	67	0	0	0	238
Parabacteroides merdae_nov_95.530% (SPN62) 	0	0	8	0	10	0	0	0	0	6
Oscillospiraceae_[G-1] bacterium_MOT-147_nov_97.735% (SPN65) 	0	0	0	0	0	5	0	0	0	0
Mediterraneibacter [Ruminococcus] gnavus_nov_94.983% (SPN74) 	0	0	18	0	24	0	0	0	0	9
Adlercreutzia caecimuris_nov_91.655% (SPN76) 	0	0	9	0	0	0	0	0	0	0
Culturomica massiliensis_nov_91.758% (SPN87) 	0	0	4	0	0	0	0	0	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.360% (SPN98) 	0	0	0	0	9	3	0	0	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.252% (SPN99) 	0	0	5	0	8	0	0	0	0	10
Staphylococcus saprophyticus_xylosus (SPP5) 	20	0	11	38	0	0	26	0	15	4
Gloeobacter multispecies_sppn7_2_nov_83.225% (SPPN7) 	0	0	13	0	4	0	0	0	0	5
Lacrimispora multispecies_sppn8_2_nov_93.191% (SPPN8) 	0	0	5	0	0	0	0	0	0	0
